RnoINT0121128 @ rn6
Intron Retention
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261965679-261967444:-
Coord C1 exon
chr1:261967288-261967444
Coord A exon
chr1:261965834-261967287
Coord C2 exon
chr1:261965679-261965833
Length
1454 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CTGCTCCCCCGACATCACAGACC
3' ss Score
5.14
Exon sequences
Seq C1 exon
TGGCTGTGGACAGGCTGCCAAACTTCCAGGCAGCCCCCAATGCTCCCGGGGACCAGCCACAAGCCCACCATCAGTGTTCCATCCACCTGAACTGTGAAGACACCCTGCTCCTCCACCAGGCCTTTGAAGATGCCAAGGGCGGCCTACCTTCCCAAAG
Seq A exon
GTAGGTGTGACCTGGCCCTGTGTGCTCTGAGCTCCTCGTACCTGACACTAAACCTTCAATGTCCCAGAATCAATCTGCTTGTGTCTCTCCATGTTTCAAAAGCACGATACATATCTCAGACAAGAAATCTGGACATCAGAGCAGTGGAGATGAAGAGGGGGTGTCTTAGTTCGGCTTTCGTTGCTGCAAAGGGACAACACTATCACGGCCACTCTGATAAAGGACAACATTTAATTGGGGCTGGCTTATAGTTTCAGAGGTTCAGTCCATTATCATGGCGGGAAGCATGCAATGTGTGGGCAGACTTGGTACCGGAGGAGCAGACAGTTCTACATCTTGATCCAAAAGCAGCCAGGAGGAGACTGTGTTCTGCAGGCAGCCAGAGGGCAGTGTGAGGGTGGGGAGGTACTTCAGCACTGGGCAGAGTTTGAGCAGTAGGAATTCTCAGAGTCCACCTACAAAGTGACACTTCCTCCAACAAGGCCACCCCGTTCCAACAAGGCCACACCTCCTAATAATGCCACTTCTGTGGGTCAAGCACAGTGAACACATGAGTCTATGGGGGCCAAACCTGCTCAAGCCACCTCGAGGGGACATATTGAGAGTGTCCCAGGTTAGTGGGGGACAGTCCTGAGAAGAATAGCACTCAAAATGAGGAGAAGAGGAAATACCTCCTGGGCAGGAGAAGGGTTCTCGGATTCAGGGACAACCTCACATCATCTGGTAGACTGCCAGTCATCTCTAGATGCCTTAAATTCACACACGTGAATGCTAGGTAAATGGCTGCCACAGGACATTGCTTTTAGGACAATGCCAAGGGGAGGTCAGCATGTTCACTGAATATAGTTTTTATTCTTTATAATAGTTTCAATCTGTGGTTGGAGAATGCACAGAGCCCCCAGGCGTGGAGGGCCAAGTGTATCTAGAGAGCTGAGGGTCTTGTGCAGCAGGGAGGAAAGGTGTTGGCTACAGGCAAAGGTTACCACAAGTATGGCAAAAGTTAGGCATGGGGCGCTGCACTATGCTGCCTGAATAGGTCTAGACGTTCTGCTTTGCCTGTTCACTCCAGACAGGATTCCTGGGCCAGTAGGGAGAGGGGCAGGCATGGTTGGACCCTGACCACTCGAGAACCTGGTGACTCAGGGATGACCCCTCCATGGTTCTCACTATCTGGCATTTGAGCTGAGGGGCCCAGATTAGAACACAGGTCTGTGAGGAAGGAAGACAAGATGGGGGCACACCTCTGAGCCAGTGAGAAAAGACCAGAACCCTGAGTCCTGGGCTCCCTGTCTCAAGGAATGCCACAGAGGTGGTCTGGACTATGCTAACCACTGTGGCTTCACAGCGATAATGAGACCAGGTCTCTGAGGGCCTTTGTTTCTCTCATGGAGATAAATTTACCTCAGGAGTTCTTCTCCTCAGTCATGACCTTCTCTGCTCCCCCGACATCACAG
Seq C2 exon
ACCTATGATTGAGCTCTGCATCCCTTCATCGCTGGACCCCACCCTGGCTCCAACAGGCTGCCATGTCGTCTCCCTCTTCACTCAGTATACACCCTACACCCTGGCAGGAGGCAAGGTCTGGGACGAGCAAAAGAAAAACACCTACGCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807:ENSRNOT00000021257:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGACAGGCTGCCA
R:
CTTTGTCTGCGTAGGTGTTTT
Band lengths:
310-1764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]