BtaEX0029242 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014313 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:HGNC:23517]
Coordinates
chr26:19347207-19359393:-
Coord C1 exon
chr26:19359202-19359393
Coord A exon
chr26:19352168-19352261
Coord C2 exon
chr26:19347207-19347362
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTGCCTCGTCCCAGGCG
3' ss Score
8.23
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCCCCTGCCTGGAGAGGCACAAAAGGCTGCTTGCAAGCAAGTTCCCAGCCTGGTCCTGGGCAGAAATGACCACATGTGGCCGGGGGCTCAGGAGGGCCGTAGGCGCCTCTCCCCGCCCCACATGGAGACGAGCTCTCTTGGACACCAGGGGACGCCTGAAGCCTGAGTACGATGCAGTGGTGGTAGGCGCAG
Seq A exon
GCGGCATACCTGCAGAGATTTGGAGTGAACACGGCGGTCTTCGAGAGACGCCACGTGATCGGGGGTGCGGCTGTCACAGAGGAGATAGTCCCAG
Seq C2 exon
AAACATGGGCTGAGGCTTCATCTTCGAAACCCCTACTCCTTCACCCCCATGCTGGAAGAGGGCACAGGGGGCAAGGTGCCCCGGTCTCTTCTGCTGGGCACAGATATGGTGGAAAATCAGAAGCAGATCGCCCAGTTCTCAAAGAAGGATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014313_MULTIEX2-2/5=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=PU(6.2=9.3)
A:
PF134501=NAD_binding_8=FE(47.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGCCTGAGTACGATGC
R:
TTTGAGAACTGGGCGATCTGC
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development