DreEX6062872 @ danRer10
Exon Skipping
Gene
ENSDARG00000014101 | pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:ZFIN;Acc:ZDB-GENE-050506-147]
Coordinates
chr13:40187721-40189570:-
Coord C1 exon
chr13:40189551-40189570
Coord A exon
chr13:40189366-40189459
Coord C2 exon
chr13:40187721-40187794
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTGTGGTTTGTGCAGTCA
3' ss Score
6.76
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
Exon sequences
Seq C1 exon
GTCACAATGGCCTCATTGCT
Seq A exon
TCAGCATATCTGCAGAAGGGAGGCCTGAGAACAGCAGTGCTGGAGCGCAGACATGTGCTTGGGGGAGCAGCTGTGTCTGAAGAGATCATTCCAG
Seq C2 exon
GGTTTCACTTCTCCAGGGCCTCCTATCTGCTTAGTTTATTACGTCCACACATCTACCAGGACCTGGAGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014101-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(9.2=100)
A:
PF134501=NAD_binding_8=FE(47.7=100)
C2:
PF134501=NAD_binding_8=PD(33.8=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]