HsaEX6089875 @ hg19
Exon Skipping
Gene
ENSG00000119943 | PYROXD2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:HGNC Symbol;Acc:23517]
Coordinates
chr10:100167339-100170715:-
Coord C1 exon
chr10:100170696-100170715
Coord A exon
chr10:100167661-100167754
Coord C2 exon
chr10:100167339-100167412
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTGCTGCCCCACTTCCCAGGCA
3' ss Score
8.62
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACACAACGGACTGGTGGCT
Seq A exon
GCAGCGTACCTGCAGAGACTGGGGGTGAACACCGCCGTCTTCGAGAGGCGCCATGTGATCGGGGGTGCAGCTGTCACTGAGGAGATCATCCCAG
Seq C2 exon
GGTTTAAGTTCTCCCGCGCGTCCTACCTGCTCAGCCTGCTGAGGCCGCAGATTTACACTGATCTGGAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119943-'5-7,'5-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(9.4=100)
A:
PF134501=NAD_binding_8=FE(48.4=100)
C2:
PF134501=NAD_binding_8=PD(32.8=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAACGGACTGGTGGC
R:
TCCAGATCAGTGTAAATCTGCGG
Band lengths:
87-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)