RnoEX6007407 @ rn6
Exon Skipping
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261981400-261983670:-
Coord C1 exon
chr1:261983651-261983670
Coord A exon
chr1:261981552-261981645
Coord C2 exon
chr1:261981400-261981473
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGGACCCTGTGCCCTCCCAGGCA
3' ss Score
6.27
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GACACAATGGGCTGGTGGCA
Seq A exon
GCAGCGTACCTCCAGAGACTAGGGGTGAACACCGCGGTCTTCGAGAGGCGCCACGTGATTGGGGGTGCAGCTGTCACTGAGGAGATCATTCCTG
Seq C2 exon
GATTCAAGTTCTCCCGAGCGTCCTATCTCCTCAGCTTACTGAGGCCCCAGATTTACACAGACCTGGAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807-'4-9,'4-7,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134501=NAD_binding_8=FE(9.4=100)
A:
PF134501=NAD_binding_8=FE(48.4=100)
C2:
PF134501=NAD_binding_8=PD(32.8=84.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAATGGGCTGGTGGC
R:
CTTCAGCTCCAGGTCTGTGTA
Band lengths:
94-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]