BtaEX0029432 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015098 | RABEPK
Description
Bos taurus Rab9 effector protein with kelch motifs (RABEPK), mRNA. [Source:RefSeq mRNA;Acc:NM_001035399]
Coordinates
chr11:96103971-96111339:+
Coord C1 exon
chr11:96103971-96104123
Coord A exon
chr11:96107928-96108089
Coord C2 exon
chr11:96111190-96111339
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTACCTTCTCTCTGGACCAGATA
3' ss Score
8.02
5' ss Seq
CAAGTATGA
5' ss Score
4.72
Exon sequences
Seq C1 exon
GAACACACCAGTGGGATTTAGCCACCTCAGAGGGCCTCCTGCCCCGGTACGAGCACACCAGCTTCATTCCCTCCTGCACACCTCACAGCATCTGGGTGTTTGGAGGGGCCGACCAGTCAGGAAATCGAAACTGCCTGCAAGTTCTGAATCCTG
Seq A exon
ATACCAGGACTTGGACTACCCCAGAGGTGACCGGCCCACCGCCATCCCCAAGAACTTTCCACACGTCATCGGCAGCCATTGGAGACCAGCTGTATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCCGTGCAGGATGTGCAGCTTCATGTGTTTGATGCAA
Seq C2 exon
ACACCCTGACCTGGTCACAACCAGAGACACATGGAAAACCTCCATCCCCCCGACATGGTCACGTGATGGTGGCAGCAGGGACAAAGCTCTTCATCCATGGTGGCTTGGCAGGGGACAATTTCTATGATGATCTCCATTGCATTGATATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015098-'6-9,'6-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=0.473 C2=0.333
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
A:
PF134151=Kelch_3=PD(51.0=45.5)
C2:
PF134181=Kelch_4=PU(68.0=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGTGGGATTTAGCCACC
R:
GCCACCATGGATGAAGAGCTT
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development