GgaEX1047816 @ galGal4
Exon Skipping
Gene
ENSGALG00000001002 | RABEPK
Description
Rab9 effector protein with kelch motifs [Source:HGNC Symbol;Acc:HGNC:16896]
Coordinates
chr17:9589166-9590101:+
Coord C1 exon
chr17:9589166-9589307
Coord A exon
chr17:9589441-9589602
Coord C2 exon
chr17:9589952-9590101
Length
162 bp
Sequences
Splice sites
3' ss Seq
TAATTTAATGTCTTAATTAGAAA
3' ss Score
4.02
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CTGGGCCCGGCTGCCTGGAGCGGACTGCGGCCGCGCTACGAGCACGCCACGTTCCTGTCCGCCTGCCGTCCCCCGCGCCTCTGGGTGTTCGGTGGCGCGCACCGGGCCGGGAACCGGAGCTGCGTCCAAGTGCTGGACCCCG
Seq A exon
AAATAGGAACCTGGGAGAGTCCCGAGGTGACGGGCATTCCGCCACTGCCCAGGACATTCCACACCTCCTCGGCAGCTATAGGGGACTGTCTGTATGTCTTCGGAGGGGGAGACAAAGGAGCGGAGCCGGTTAAAGACCAACAGCTTCATGTCTTTGACACAG
Seq C2 exon
TTGCTTTGGCATGGACCCAGCCTGACACCCATGGTGATCCGCCTTCTCCTCGGCATGGACATGTTGTAGTTGCAGTTGGGACCAAGCTTTTCATACATGGAGGTTTAGCTGGTGATATTTTTTACAATGACCTGTTCTGCATTGATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001002-'4-7,'4-3,5-7
Average complexity
S
Mappability confidence:
89%=75=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.235
Domain overlap (PFAM):
C1:
PF134151=Kelch_3=PU(46.9=47.9)
A:
PF134151=Kelch_3=PD(51.0=45.5),PF134151=Kelch_3=PU(50.9=49.1)
C2:
PF134151=Kelch_3=PD(47.2=49.0),PF134151=Kelch_3=PU(48.0=47.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGCACGCCACGTTC
R:
TCAATGCAGAACAGGTCATTGT
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]