MmuEX6100734 @ mm9
Exon Skipping
Gene
ENSMUSG00000070953 | Rabepk
Description
Rab9 effector protein with kelch motifs [Source:MGI Symbol;Acc:MGI:2139530]
Coordinates
chr2:34640066-34646175:-
Coord C1 exon
chr2:34646023-34646175
Coord A exon
chr2:34641087-34641248
Coord C2 exon
chr2:34640066-34640215
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTATTTTCTCTCTGGACTAGAAG
3' ss Score
7.13
5' ss Seq
CAAGTATGG
5' ss Score
4.99
Exon sequences
Seq C1 exon
GAACACACCAGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTCGGTACGAGCATGCCAGCTTCCTTCCCTCCTGCTCTCCTCACAGCATCTGGGTGTTTGGAGGTGCAGACCAGTCAGGAAATCGAAACTGTCTGCAAGTCATGAGTCCTG
Seq A exon
AAGACAGGACGTGGAGCACACCAGAAGTGACTGGCTCCCCTCCATCCCCAAGAACATTCCACACATCGTCCGCAGCTATCGGAAACCAACTATACGTCTTTGGGGGAGGAGAGAGAGGTGCCCAGCCTGTGGAGGACGTGAAGTTGCATGTATTTGACGCAA
Seq C2 exon
ACACTCTGACATGGTCTCAACCGGAGACACATGGAAGTCCTCCGTCTCCTCGGCATGGCCATGTGATGGTGGCAGCGGGCACAAAACTCTTCATCCACGGAGGATTGGCAGGGGACAAGTTCTTTGATGATCTCCATTGCATTGATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070953-'7-9,'7-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=0.436 C2=0.301
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
A:
PF0764610=Kelch_2=PD(20.8=20.0),PF134181=Kelch_4=PU(70.4=69.1)
C2:
PF134181=Kelch_4=PD(27.8=29.4),PF134181=Kelch_4=PU(68.0=66.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGGGAGGGCCTCTTG
R:
GAACTTGTCCCCTGCCAATCC
Band lengths:
253-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: