BtaEX0029619 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61608505-61628504:+
Coord C1 exon
chr16:61608505-61608555
Coord A exon
chr16:61621773-61621924
Coord C2 exon
chr16:61628421-61628504
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCTTCTATCTATAGGTA
3' ss Score
11.88
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGTCAGATAACACTAATGGATGTTCCAGTATTTAAAGCCATTCAACCAGAT
Seq A exon
GTATCCCTACAACATCACCCTTAGAGCAGTCCTTTTAAGAGTGTTGGAACCTACAAGATGAAATTTAGACCAAGAATTTGACTTTACAGAACAGACCTACAAGACATAAGAGAAGCTGTGACTCCCGTGAAATTCAGTAATTCTTTCATAGG
Seq C2 exon
GAGCTTGCAAGTTGTGGATGGAATAAAAAAGAAAAATACAGTTCTGCACCAAATGCAGTTGCCTTCACAAGAAGATTTAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.3=100)
A:
NO
C2:
PF0061714=RasGEF=FE(14.0=100)
Main Inclusion Isoform:
ENSBTAT00000034000fB5726
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGATAACACTAATGGATGTTCC
R:
CATTTGGTGCAGAACTGTATTTTTCT
Band lengths:
106-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development