MmuEX0038678 @ mm10
Exon Skipping
Gene
ENSMUSG00000026594 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:MGI Symbol;Acc:MGI:1925505]
Coordinates
chr1:156887947-156900636:-
Coord C1 exon
chr1:156900586-156900636
Coord A exon
chr1:156892908-156893012
Coord C2 exon
chr1:156887947-156888030
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGCTTCTGTCTATAGGTA
3' ss Score
11.86
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGTCAGATAACACTAATGGATGTTCCAGTGTTTAAAGCTATTCAGCCAGAT
Seq A exon
GTATCCCTACATCATCACCCTTAGAACAGTCCTTTTAAGAGTGTTGGAACCTACAAGACGTAAGAGAAGCTGTGACTCCTGTGAATTGAGTCATTCTCTCATAGG
Seq C2 exon
GAACTTTCAAGTTGTGGATGGAATAAAAAAGAAAAATATAGTTCTGCACCAAATGCAGTTGCTTTCACAAGAAGATTTAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026594_MULTIEX1-4/4=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(19.3=100)
A:
NO
C2:
PF0061714=RasGEF=FE(13.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGATAACACTAATGGATGTTCC
R:
TAAATCTTCTTGTGAAAGCAACTGCA
Band lengths:
130-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types