RnoEX0073800 @ rn6
Exon Skipping
Gene
ENSRNOG00000004736 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:RGD Symbol;Acc:1311537]
Coordinates
chr13:74492278-74512396:-
Coord C1 exon
chr13:74512346-74512396
Coord A exon
chr13:74497564-74497668
Coord C2 exon
chr13:74492278-74492361
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTCTTCTGTCTATAGGTA
3' ss Score
11.92
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGTCAGATAACACTAATGGATGTTCCAGTGTTTAAAGCTATTCAGCCAGAT
Seq A exon
GTAACCCTACATCATCACCCTTAGAGCAGTCCTTTTAAGAGTGTTGGAACCTACAAGACGTAAGAGAAGCTGTGACTCCTGTGAATTGAGTCATTCTCTCATAGG
Seq C2 exon
GAACTTTCAAGTTGTGGATGGAATAAAAAAGAAAAATACAGTTCTGCACCAAATGCAGTTGCTTTCACAAGAAGATTTAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004736_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(18.0=100)
A:
NO
C2:
PF0061714=RasGEF=FE(14.0=100)
Main Inclusion Isoform:
ENSRNOT00000077169fB12099
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAGATAACACTAATGGATGTTCC
R:
TAAATCTTCTTGTGAAAGCAACTGCA
Band lengths:
130-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]