HsaEX1030556 @ hg38
Exon Skipping
Gene
ENSG00000116191 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr1:178785557-178808128:+
Coord C1 exon
chr1:178785557-178785607
Coord A exon
chr1:178796622-178796769
Coord C2 exon
chr1:178808045-178808128
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTTCTATCTGTAGGTA
3' ss Score
12.67
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGTCAGATAACATTAATGGATGTTCCAGTATTTAAAGCTATTCAACCAGAT
Seq A exon
GTATCCCTACAGCATCACCCTTAGAACATTCCTTTTAAGAGTATTGGAACCTACAAGATGAAATTTAGATCAAGAATTTCTTTGCAGAACAAACCTACAAGATATAAGGAAGCTCTGACTTCTGTGAATTCAGTAATTCTTTCATAGG
Seq C2 exon
GAGCTTTCAAGTTGTGGATGGAATAAAAAAGAAAAATATAGTTCTGCACCAAATGCAGTTGCCTTCACAAGAAGATTCAATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116191-'11-14,'11-13,12-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(6.9=100)
A:
NO
C2:
PF0061714=RasGEF=FE(11.6=100)
Main Inclusion Isoform:
ENST00000367635fB24062
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains