BtaEX0029753 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63406722-63410581:-
Coord C1 exon
chr17:63410493-63410581
Coord A exon
chr17:63409820-63409937
Coord C2 exon
chr17:63406722-63406914
Length
118 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTGGCCCCGGCCAGCGG
3' ss Score
5.07
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGGAGTTCCCCCCACAGGTCCTGCAACACAACCCGCCCAATGGCTGGTTCCGCCTCCTGCCCTTTCCCAGAGCAGAGGAGGATTCTGG
Seq A exon
CGGGAGCTTGGGTGCTCTGAGGCTGAAGGTGCGCCTGACCGAGGACTCTGTCCTGCCCTCACGGTACTACCAGCCACTTAGGGAGCTGCTCATGGAGTCGGTGCTGGGGCCAGCAGAG
Seq C2 exon
GAGAATCTCCTTCAAGGGTGCACCCTCCGAGGAACACGTGCGTGAGGCCAGCCTGGGGCTGCTGACGGGCTACCTGGGGCCTATTGTGGACGCCATTGTGGGCTCCGTGGGGCGCTGCCCATCCGCCATGCGCCTCGCCTTCAAGCAGCTGCGCCAGCGCGTGGAGGAGCGTTTTCCCCAGGCGGAGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739_MULTIEX2-4/7=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.3)
A:
NO
C2:
PF0061614=RasGAP=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGGTCCTGCAACACAACC
R:
GGGAAAACGCTCCTCCACG
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development