GgaEX1048323 @ galGal4
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11196207-11196721:-
Coord C1 exon
chr15:11196639-11196721
Coord A exon
chr15:11196437-11196554
Coord C2 exon
chr15:11196207-11196360
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCATCACGCTGTCACTGTAGGGG
3' ss Score
6.12
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTAAAGGTCCCTCTGGATGCACCGGGTCCCACGGAGGGCTGGTTCCAGCTCCTGCCCTTCCCCAGCAGCACCAAGGAGCCAGG
Seq A exon
GGGACAGCTGGGCTCCCTGCGGCTGACGGTGCGGCTGCTGGAGGACAGAGTCCTGCCCCAGCACTGCTACCAGCCCCTCATCCAGCTCCTGGCCGAGCCCCTCTGCTGCCCAGGCCAG
Seq C2 exon
CCCTCAGCCAGCACGGCACTGGCTGTCCTGGAGGAGGTGACCTCAGGGGACAGCAGGCAGGACGTGGCCACCAAGCTGGTGAAGGTCTTCCTGGCTCAGGATCTGGCCGTGCCATTCCTGGACTACATCATCACCCGTGAGCTGACCAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.6)
A:
NO
C2:
PF0061614=RasGAP=PU(6.8=25.0)
Main Inclusion Isoform:
ENSGALT00000013239fB11311
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGTCCCTCTGGATGCACC
R:
CGGTTCTGGTCAGCTCACG
Band lengths:
235-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]