RnoEX6064624 @ rn6
Exon Skipping
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41432058-41433143:-
Coord C1 exon
chr12:41433058-41433143
Coord A exon
chr12:41432336-41432453
Coord C2 exon
chr12:41432058-41432211
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTACCGTCTGCTCCCTCTAGGGG
3' ss Score
10.52
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGGAATTCACCCCACAGACCCTCCAGCAGAAGCCACCCAATGGCTGGTTCCGTCTCCTGCCTTTTCCTAGAGCTGAGGATTCTGG
Seq A exon
GGGGAGCCTGGGTGCCCTGCGGCTGAAGGTGCGCCTCACTGAGGACCGGGTCCTGCCTTCCCAGTACTACCAGCCTCTCATGGAACTGCTTCTGGAGTCCGTGCAAGGGCCAGCCGAG
Seq C2 exon
GAGGACACCACCAGCCCCCTGGCATTGCTAGAGGAGTTGGCCTCTGGGGACTGTCGTCAGGACCTTGCCACCAAACTGGTGAAGCTTTTCCTGGGCCGGGGCCTGGCTGGGCCCTTTCTAGATTACCTCACAAGGCGTGAGGTGGCACGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374-'16-16,'16-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.050 C2=0.077
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.4)
A:
NO
C2:
PF0061614=RasGAP=PU(6.8=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCACCCCACAGACCCTC
R:
TGGTTCGTGCCACCTCAC
Band lengths:
237-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]