MmuEX6020431 @ mm10
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:120662919-120664124:+
Coord C1 exon
chr5:120662919-120663004
Coord A exon
chr5:120663726-120663843
Coord C2 exon
chr5:120663971-120664124
Length
118 bp
Sequences
Splice sites
3' ss Seq
GTATGGTCTGCCTCATCTAGGGG
3' ss Score
6.7
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GTGGAGTTCACCCCACAGACCCTGCAGCAGAAGCCACCTAATGGCTGGTTCCGGCTCCTGCCCTTTCCTAGAGCTGAGGATTCTGG
Seq A exon
GGGGAGCCTGGGTGCCCTGCGGCTGAAGGTGCGCCTCACTGAGGACCGGGTCCTGCCTTCCCAGTACTACCAGCCTCTCATGGAACTGCTTCTGGAGTCGGTGCAAGGGCCGGCTGAG
Seq C2 exon
GAGGACACCACCAGCCCCCTGGCTCTGCTAGAGGAGCTGGCCTCTGGGGACTGTCGTCAGGACCTTGCCACCAAGCTGGTGAAGCTGTTCCTGGGCCGGGGCCTGGCCGGGCCCTTTCTAGATTATCTCACAAGGCGTGAGGTGGCTCGAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602-'20-25,'20-21,28-25=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.050 C2=0.077
Domain overlap (PFAM):
C1:
PF0016825=C2=PD(1.2=3.4)
A:
NO
C2:
PF0061614=RasGAP=PU(17.1=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCACCCCACAGACCCT
R:
GTTCGAGCCACCTCACGC
Band lengths:
235-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types