BtaEX0029986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:4574649-4623712:+
Coord C1 exon
chr22:4574649-4574745
Coord A exon
chr22:4576987-4577037
Coord C2 exon
chr22:4623602-4623712
Length
51 bp
Sequences
Splice sites
3' ss Seq
GAATGCTGTTTGATGCATAGGTC
3' ss Score
4.95
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTTATTCTTCACCGTACAGTATTGCAACCAACCGCATGATTCCACAGACATCCATCACGCCATTCATTGCTGCTTCCCCTGTCTCCACATACCAG
Seq A exon
GTCCAGAGCACTTCATGGATGCCTCATCCGCCATACGTTATGCAACCAACA
Seq C2 exon
GGTGCTGTGATTACGCCAGCGATGGACCATCCCATGTCAATGCAGCCAGCAAGCATGATGGGCCCCCTGACACAGCAGATGAACCACCTTTCGCTGGGCACCACGGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.811
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCCATTCATTGCTGCTTC
R:
GCGAAAGGTGGTTCATCTGCT
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development