DreEX0061394 @ danRer10
Exon Skipping
Gene
ENSDARG00000044574 | rbms3
Description
RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
Coordinates
chr16:39702386-39726350:-
Coord C1 exon
chr16:39726254-39726350
Coord A exon
chr16:39716364-39716414
Coord C2 exon
chr16:39702386-39702496
Length
51 bp
Sequences
Splice sites
3' ss Seq
ATGCTGGTTTCCGCCCACAGGTC
3' ss Score
10.76
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTTCTACTCCTCACCCTACAGCATCTCCACAAACCGCATGATCGCTCAAACGTCAATCACTCCATTCATCGCAGCCTCTCCTGTCTCCACATATCAG
Seq A exon
GTCCAGAGTACGTCGTGGATGCCTCACCAACAGTACGTTATGCAACCTACG
Seq C2 exon
GGTGCTGTTATAACGCCAACCATGGACCACACCATCTCCATGCAGCCTGCGAACATGATGGGACCCCTCACCCAGCAGATGAACCACCTGTCTCTGGGCACCACTGGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044574_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.078 C2=0.649
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACCCTACAGCATCTCCA
R:
CTGCATGGAGATGGTGTGGTC
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]