RnoEX0074772 @ rn6
Exon Skipping
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:124892608-124936196:-
Coord C1 exon
chr8:124936100-124936196
Coord A exon
chr8:124933643-124933693
Coord C2 exon
chr8:124892608-124892718
Length
51 bp
Sequences
Splice sites
3' ss Seq
GACTGCTGTTTGATGCGTAGGTC
3' ss Score
6.32
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTTACTCTTCACCGTACAGTCTCGCAACCAACCGCATGATCCCGCAGACATCTATCACGCCATTCATTGCCGCCTCCCCTGTCTCCACATACCAG
Seq A exon
GTCCAGAGCACGTCATGGACGCCACACCTGCCATACATAATGCAGCCAACA
Seq C2 exon
GGTGCTGTGATCACACCCACCATGGACCACCCCATGTCAATGCAGCCAACCAACATCGTGGGTCCCCTGACGCAGCAGATGAACCATCTTTCCCTGGGGACGGCAGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.044 C2=0.749
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCACCGTACAGTCTCGCA
R:
CGATGTTGGTTGGCTGCATTG
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]