GgaEX1002587 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:40116630-40150300:+
Coord C1 exon
chr2:40116630-40116726
Coord A exon
chr2:40119797-40119847
Coord C2 exon
chr2:40150190-40150300
Length
51 bp
Sequences
Splice sites
3' ss Seq
AGAAAGTATTTGATACGCAGGTC
3' ss Score
0.63
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTTATTCCTCACCGTACAGTATTCCAACAAACCGCATGATTCCACAGACATCAATCACGCCATTCATTGCTGCTTCCCCTGTCTCTACATATCAG
Seq A exon
GTCCAGAGTACTTCATGGATGCCTCATCCGCCATATGTTATGCAACCAACA
Seq C2 exon
GGTGCTGTGATAACACCAACAATGGACCACACTATGTCAATGCAGCCAGCAAGCATGATGGGCCCACTGACCCAACAGATGAACCACCTTTCCTTGGGCACAACAGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.703
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTCATTGCTGCTTCCCCT
R:
GTTCCTGTTGTGCCCAAGGAA
Band lengths:
146-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]