BtaEX0029989 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013308 | RBMX
Description
Bos taurus RNA binding motif protein, X-linked (RBMX), mRNA. [Source:RefSeq mRNA;Acc:NM_001172039]
Coordinates
chrX:20459629-20461010:-
Coord C1 exon
chrX:20460904-20461010
Coord A exon
chrX:20460289-20460460
Coord C2 exon
chrX:20459629-20459781
Length
172 bp
Sequences
Splice sites
3' ss Seq
TAACCATGGATATTATTTAGTCC
3' ss Score
2.34
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
TTCTCTTGATGAAAGATCGTGAAACCAACAAATCTAGAGGATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGATGCTAAGGATGCAGCCAGAGACATGAATGGAAAG
Seq A exon
TCCTTAGATGGAAAAGCCATCAAGGTAGAACAAGCCACTAAACCGTCATTTGAAAGTGGTAGACGTGGACCACCTCCACCTCCAAGAAGCAGAGGCCCTCCCAGAGGCCTTCGGGGAGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCATCCCATGGAGGGCACATGG
Seq C2 exon
ATGATGGTGGCTATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTTCCGGTAAAAAGAGGACCACCACCACGAAGTGGGGGTCCTCCTCCTAAAAGATCTGCCCCTTCAGGACCAGTTCGAAGCAGCAGTGGAATGGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013308-'5-4,'5-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(49.3=100)
A:
PF0007617=RRM_1=PD(9.9=12.1)
C2:
PF080816=RBM1CTR=PU(17.8=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAAACCAACAAATCTAGAGGA
R:
TCTTCCTCCCATTCCACTGCT
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development