DreEX6058370 @ danRer10
Exon Skipping
Gene
ENSDARG00000014244 | rbmx
Description
RNA binding motif protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
Coordinates
chr14:31519919-31520881:-
Coord C1 exon
chr14:31520775-31520881
Coord A exon
chr14:31520195-31520354
Coord C2 exon
chr14:31519919-31520020
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTGTACTTTTTGTATTCAAGCCT
3' ss Score
5.02
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
TTCTGTTGATGAAAGATCGTGAAACGAACAAATCTAGAGGTTTTGCGTTTGTAACTTATGAAAATCCTGGTGATGCTAAGGATGCTGCCAGAGAAATGAATGGAAAG
Seq A exon
CCTCTTGATGGAAAGCCAATTAAAGTGGAGCAAGCCACAAAACCTCAGTTTGAGACTTCAGGACGCCGTGGGCCACCACCACCTCGCAGTCGTGGCCCTTCTAGAGGGCTGCGAGGGTCCAGAGGAGGCCCAAGTGGAATGCGGGGCCCACCAAGCAGAG
Seq C2 exon
GCATGTCGTCCAGAGGGCCACCACCAATGAAAAGAGGCCCCCCAGAGCGAAACGGAGGACCCCCACCCAAGAGATCTGCACCTTCTGGGCCAATGGGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014244-'5-11,'5-6,6-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(49.3=100)
A:
PF0007617=RRM_1=PD(9.9=13.0)
C2:
PF080816=RBM1CTR=PU(22.2=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGTTGATGAAAGATCGTGAAACG
R:
CATTGGCCCAGAAGGTGCAG
Band lengths:
202-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]