RnoEX6027348 @ rn6
Exon Skipping
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159888184-159889777:-
Coord C1 exon
chrX:159889671-159889777
Coord A exon
chrX:159888838-159889009
Coord C2 exon
chrX:159888184-159888336
Length
172 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTCTCTTTGAAGTCC
3' ss Score
7.36
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
TGCTTTTGATGAAGGACCGAGAAACCAATAAGTCAAGAGGATTTGCTTTTGTCACATTTGAAAGCCCAGCAGATGCAAAGGATGCTGCCAGAGACATGAATGGAAAG
Seq A exon
TCCTTAGATGGAAAAGCCATCAAGGTGGAGCAAGCCACCAAACCATCATTTGAAAGTGGCAGACGTGGACTACCTCCACCTCCAAGAAGCAGAGGCCCTCCCAGAGGTCTTCGAGGAGGAAGAGGGGGAAGTGGAGGAACCAGAGGACCCCCATCACGGGGAGGACACATGG
Seq C2 exon
ATGATGGTGGCTACTCCATGAATTTTACTTTGAGTTCTTCCAGAGGACCTCTTCCAGTAAAAAGAGGACCACCACCAAGAAGTGGAGGTCCTCCTCCTAAAAGATCAGCACCTTCAGGACCAGTTCGCAGCAGCAGTGGAATGGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(49.3=100)
A:
PF0007617=RRM_1=PD(9.9=12.1)
C2:
PF080816=RBM1CTR=PU(17.8=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAAGGACCGAGAAACCA
R:
TCTTCCTCCCATTCCACTGCT
Band lengths:
253-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]