GgaEX0009210 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:4424108-4430819:-
Coord C1 exon
chr4:4430713-4430819
Coord A exon
chr4:4425312-4425483
Coord C2 exon
chr4:4424108-4424224
Length
172 bp
Sequences
Splice sites
3' ss Seq
TAAAGCAGCTTCTTCTTTAGTCA
3' ss Score
0.05
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TCCTCCTGATGAAAGATCGTGAAACCAACAAGTCAAGAGGATTTGCTTTTGTAACGTTTGAGAGTCCAGCAGATGCTAAAGATGCTGCCAGAGACATGAATGGAAAG
Seq A exon
TCATTAGATGGGAAAGCAATTAAAGTGGAACAAGCAACCAAGCCATCCTTTGAAAGTGGTGGTAGGCGTGGGCCACCACCCCCTCCACGAAGCAGAGGTCCTCCCAGGGGCCTTAGAGGTGGAAGAGGCGGAAGTGGCGCGAGAGGACCACCTTCAAGAGGGAGTCACTTGG
Seq C2 exon
GGTCTTCTCGAGGGCCTCTTCCCATGAAGAGAGGTCCACCTCCACGAAGTGGAGGCCCTCCACCTAAAAGATCTGCACCTTCGGGACCAGTGCGTAGCAGTAGCATGGGAGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(49.3=100)
A:
PF0007617=RRM_1=PD(9.9=12.1)
C2:
PF080816=RBM1CTR=PU(17.8=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTGATGAAAGATCGTGA
R:
TCCTCCCATGCTACTGCTACG
Band lengths:
220-392
Functional annotations
There are 0 annotated functions for this event