BtaEX0030009 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023867 | RC3H2
Description
ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
Coordinates
chr11:94043392-94055372:-
Coord C1 exon
chr11:94055255-94055372
Coord A exon
chr11:94052421-94052654
Coord C2 exon
chr11:94043392-94043567
Length
234 bp
Sequences
Splice sites
3' ss Seq
TAGTTTCCTTTTTCTTGAAGGTG
3' ss Score
6.89
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTACCAGATCATCAGTCAGTAAAGTTAAGTAATTTAGGTGAGAACAAACACTATGAGGTTGCAAAGAAATGTGTTGAAGATTTGGCGCTCTACTTAAAACCACTAAGTGGAGGTAAAG
Seq A exon
GTGTAGCTAGTTTGAACCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAACTAGTGACACTTGTAAACTGTCAGCTGGTGGAGGAAGAAGGTCGTGTAAGAGCCATACGCGCAGCCCGTTCACTTGGAGAAAGGACTGTAACGGAGCTAATATTACAGCACCAGAACCCTCAGCAGTTGTCTGCCAACCTATGGGCTGCTGTCAGGGCTCGAGGATGCCAGTTTCTAGGGCCAG
Seq C2 exon
CTATGCAGGAAGAAGCTTTGAAGTTGGTGTTACTGGCATTAGAAGATGGTTCTGCTCTCTCAAGGAAAGTTCTGGTACTTTTTGTTGTGCAAAGACTAGAACCAAGATTTCCTCAGGCATCAAAAACAAGTATTGGTCATGTTGTGCAACTACTGTATCGAGCTTCTTGTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023867_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGATCATCAGTCAGTAAAGTT
R:
CTTAAAACAAGAAGCTCGATACAGT
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development