RnoEX6016634 @ rn6
Exon Skipping
Gene
ENSRNOG00000009196 | Rc3h2
Description
ring finger and CCCH-type domains 2 [Source:RGD Symbol;Acc:1304833]
Coordinates
chr3:21658476-21667270:-
Coord C1 exon
chr3:21667153-21667270
Coord A exon
chr3:21664454-21664687
Coord C2 exon
chr3:21658476-21658651
Length
234 bp
Sequences
Splice sites
3' ss Seq
TATGTCTCCATTTGTTAAAGGTG
3' ss Score
7.32
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTACCAGATCATCAGTCAATAAAGTTAAGTAATCTAGGTGAGAATAAACACTATGAAGTGGCAAAAAAATGTGTGGAGGATTTGGCACTCTACTTAAAACCACTAAGTGGAGGTAAAG
Seq A exon
GTGTAGCTAGTTTGAACCAGAGTGCCCTGAGCCGTCCAATGCAAAGGAAACTAGTTACACTTGTAAACTGTCAACTGGTGGAGGAAGAAGGTCGTGTCAGAGCTATGCGAGCGGCCCGTTCACTAGGAGAAAGAACTGTGACAGAACTGATACTGCAGCACCAGAACCCTCAGCAGCTGTCTGCCAACCTGTGGGCTGCTGTCAGGGCTCGAGGATGCCAGTTTCTAGGGCCAG
Seq C2 exon
CTATGCAAGAAGAAGCCTTGAAGTTGGTATTGCTGGCATTAGAAGATGGTTCTGCTCTCTCTAGGAAAGTTCTGGTACTTTTTGTTGTGCAAAGACTAGAACCAAGATTTCCTCAGGCATCAAAAACAAGTATTGGCCATGTTGTGCAGCTACTGTACCGAGCTTCTTGTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009196-'6-6,'6-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAGATCATCAGTCAATAAAGTT
R:
TAAAACAAGAAGCTCGGTACAGT
Band lengths:
292-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]