GgaEX1048721 @ galGal3
Exon Skipping
Gene
ENSGALG00000001253 | RC3H2
Description
NA
Coordinates
chr17:9504826-9506390:-
Coord C1 exon
chr17:9506273-9506390
Coord A exon
chr17:9505587-9505820
Coord C2 exon
chr17:9504826-9505001
Length
234 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGTTTCTTTTGAAGGTG
3' ss Score
12.19
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GTACCTGATCATCAGACAGTAAAGTTGAGTAATGTAGGAGAGAACAAACATTATGAAGTAGCAAAGAAATGTGTTGAGGATTTAGCACTCTACTTAAAGCCATTAAGTGGAGGAAAAG
Seq A exon
GTGTTGCTAGCTTGAATCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAGCTTGTGACACTGGTGAATTGTCAGCTGGTAGAGGAAGAGGGTCGAGTTAGAGCTATGAGAGCAGCTCGATCACTGGGCGAGAGAACTGTTACAGAATTGATCTTGCAGCACCAAAATCCTCAGCAGCTTTCTGCCAATCTTTGGGCTGCTGTCAGGGCACGAGGATGTCAGTTTCTAGGGCCAG
Seq C2 exon
CTATGCAAGAGGAGGCACTGAAACTTGTATTACTGGCACTGGAAGATGGCTCCGCACTCTCAAGAAAAGTTCTGGTACTTTTTGTGGTGCAAAGGCTAGAACCAAGATTTCCTCAGGCCTCTAAAACAAGCATTGGTCATGTTGTGCAGCTACTGTATAGAGCATCATGCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001253-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATCAGACAGTAAAGTTGAGT
R:
TGCTCTATACAGTAGCTGCACA
Band lengths:
277-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]