DreEX0061452 @ danRer10
Exon Skipping
Gene
ENSDARG00000063050 | rc3h2
Description
ring finger and CCCH-type domains 2 [Source:ZFIN;Acc:ZDB-GENE-060503-694]
Coordinates
chr10:9771130-9776871:+
Coord C1 exon
chr10:9771130-9771247
Coord A exon
chr10:9774237-9774470
Coord C2 exon
chr10:9776696-9776871
Length
234 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTCTGTCCCGCACAGGTG
3' ss Score
10.37
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
GTTCCTGAGGGAGAGGTTGTGAGTGTGGGCAATGCTGAAGACACGAGACATTATGAAGTGTGCAGGATGTGTGTGGAGGAGCTGGCGCTGTACCTCAAACCAGTCAGTGGAGGAAAAG
Seq A exon
GTGTAATGTCGGCGAGTTCAAGTGCTCTCAGTCGGCCCATGCAGAGGAAGCTGGTGACGCTGGTGAACTGTCAGCTGGTGGAGGAAGAGGGCCGCGTGCGGGCGGTGCGGGCCTGCAGGTCTCTGGGTGAACGAACCGTCACTGAGCTCATCCTGCAGCACCAGAACCCACAGCAGCTCTCTGCAAACCTGTGGGCTGCAGTAAGGGCACGCGGGTGCCAGTTCCTTGGGCCTG
Seq C2 exon
CCATGCAGGAGGATGCTCTGAAGCTGGTGCTGTTGGCTCTGGAGGATGGATCTGCTCTGTCAAGGAAGGTTCTGGTTCTGTTTGTGGTGCAGAAACTGGAAGCGCGGTTTCCTCAGGCGTCAAAGACCAGCATAGGGCATGTGGTTCAGCTGCTGTATCGAGCCTCCTGCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063050-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0136316=FYVE=PD(27.9=72.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGAGGGAGAGGTTGTG
R:
GAGGCTCGATACAGCAGCTGA
Band lengths:
284-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]