BtaEX0030797 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:62111223-62182479:+
Coord C1 exon
chr9:62111223-62111291
Coord A exon
chr9:62140167-62140267
Coord C2 exon
chr9:62182413-62182479
Length
101 bp
Sequences
Splice sites
3' ss Seq
CCTCATTGTCATCACTTTAGAAA
3' ss Score
6.6
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTACTTGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTCCAGCCCACTGGA
Seq A exon
AAATACAAACCTGGTCGATGTGATGATATTTTGAAATGGAAGCCTCCCAGTCTTAATTCTGTGGATTTTCGCCTAAAAATAACAAGAATGGGAGGAGAAGG
Seq C2 exon
GTTGCTTCCTCAGAACATTGGCCTTCTCTATGTTGGAGGTTATGAAAGACCCTTTGCACAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725-'18-27,'18-23,23-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
A:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
C2:
PF0391910=mRNA_cap_C=FE(22.4=100)
Main Skipping Isoform:
ENSBTAT00000003532fB5992
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGAAGGAAATTTTGCCAAAGA
R:
TGATTTGTGCAAAGGGTCTTTCA
Band lengths:
132-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development