RnoEX0076578 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48636568-48775626:+
Coord C1 exon
chr5:48636568-48636636
Coord A exon
chr5:48660088-48660188
Coord C2 exon
chr5:48775503-48775626
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTAATCCACTTTAGAAA
3' ss Score
7.24
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTTCTGGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTTCAGCCGATTGGA
Seq A exon
AAATACAAACCTGGTCGATGTGATGACATTTTGAAATGGAAACCTCCCAGCCTAAATTCTGTGGACTTTCGACTTAAGATAACAAGAATGGGAGGAGAAGG
Seq C2 exon
GTGACAAAAGAACTAAAACAGTACGACAACAAAATTATAGAATGCAAATTTGAGAACAACAGCTGGGTCTTCATGAGACAGAGAATAGACAAAAGTTTCCCAAATGCCTACAACACAGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(11.8=100),PF0391910=mRNA_cap_C=FE(23.4=100)
A:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
C2:
PF0133114=mRNA_cap_enzyme=PD(5.9=26.2),PF0391910=mRNA_cap_C=FE(43.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGAAGGAAATTTTGCCA
R:
GCTGTGTTGTAGGCATTTGGG
Band lengths:
188-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]