MmuEX0040223 @ mm10
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33379369-33443667:+
Coord C1 exon
chr4:33379369-33379437
Coord A exon
chr4:33404153-33404253
Coord C2 exon
chr4:33443601-33443667
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTAATCCACTTTAGAAA
3' ss Score
7.24
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTTCTGGAAGGAAATTTTGCCAAAGAAGTCAGCCATGAAATGGATGGACTTATTTTTCAGCCTATTGGA
Seq A exon
AAATACAAGCCTGGTCGATGTGATGACATTTTGAAATGGAAACCTCCCAGTCTAAACTCTGTGGATTTTCGACTTAAGATAACAAGAATGGGAGGAGAAGG
Seq C2 exon
GTTGCTTCCACAGAATGTTGGCCTTCTCTATGTTGGAGGTTATGAAAGACCCTTTGCACAAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274_MULTIEX3-5/7=2-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
A:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(19.3=50.0)
C2:
PF0391910=mRNA_cap_C=FE(25.0=100)
Main Skipping Isoform:
ENSMUST00000029942fB3494
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGAAGGAAATTTTGCCA
R:
TGATTTGTGCAAAGGGTCTTTCA
Band lengths:
134-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types