GgaEX1049782 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78658791-78715405:+
Coord C1 exon
chr3:78658791-78658859
Coord A exon
chr3:78687444-78687544
Coord C2 exon
chr3:78715339-78715405
Length
101 bp
Sequences
Splice sites
3' ss Seq
CACTTTTTAATTTGCTTCAGAAA
3' ss Score
7.66
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CTCCTGGAAGGAAGCTTTGCTAGAGAAGTTAGCCACGAAGTGGATGGATTGATATTTCAGCCTACAGGA
Seq A exon
AAATACAAGCCTGGTCGATGTGACGATATTCTGAAATGGAAGCCACCCAGCCTGAACTCTGTTGATTTTCGTCTGAAGATAACGAGAATTGGTGGAGAAGG
Seq C2 exon
GCTACTCACCCAGAATGTTGGTCTTCTTTACGTTGGAAACTTTGACAGACCTTTTGCACAGATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0133114=mRNA_cap_enzyme=FE(11.6=100)
A:
PF0133114=mRNA_cap_enzyme=PD(6.9=38.2),PF0391910=mRNA_cap_C=PU(17.3=50.0)
C2:
PF0391910=mRNA_cap_C=FE(22.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAAGGAAGCTTTGCTAG
R:
TCTGTGCAAAAGGTCTGTCAA
Band lengths:
130-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]