BtaEX0031424 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43429969-43431093:+
Coord C1 exon
chr15:43429969-43430109
Coord A exon
chr15:43430582-43430618
Coord C2 exon
chr15:43430993-43431093
Length
37 bp
Sequences
Splice sites
3' ss Seq
GTACTAATATTCTGTTTCAGTTA
3' ss Score
8.73
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTCCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAACAAGAAAAGTACTTGCAAGCATTACTGAGTGCAGTTTCTGTCCATCAGAAACTCAGTGGCAATAACCCTCTTACTGTCAGGCCAGCACTTGCTCTGTCTCCAG
Seq A exon
TTATCATGTGATGGAACCCCAAAGGGTTCATGTAGAG
Seq C2 exon
GGACTGAAAGGAGGACTTCAAGAATGTCCACTGTGCTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAACCCATCCAATAGCTTTGCTCGAGGAGGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981-'43-61,'43-60,44-61
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.212
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(22.4=77.1)
A:
NO
C2:
PF066029=Myotub-related=FE(6.9=100)
Main Inclusion Isoform:
ENSBTAT00000061615fB6137
Main Skipping Isoform:
ENSBTAT00000061615fB6139
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACTGTCAGGCCAGCACT
R:
CGAGCAAAGCTATTGGATGGGT
Band lengths:
126-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development