MmuEX0041065 @ mm9
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117491401-117492509:-
Coord C1 exon
chr7:117492369-117492509
Coord A exon
chr7:117491875-117491911
Coord C2 exon
chr7:117491401-117491496
Length
37 bp
Sequences
Splice sites
3' ss Seq
GTACTAATATTCTGTTTCAGTTA
3' ss Score
8.73
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAGCAAGAAAAGTACTTGCAAGCCTTATTGACTGCAGTCATTGTCCATCAGAAACTCAGAGGCAGCAGTACTCTCACTGTCAGACCAGCACTTGCTCTGTCCCCAG
Seq A exon
TTATCATGTGATGGAACCCCAAAGGGTTCATGTAGAG
Seq C2 exon
GGACTGAAAGGAGGTCTTCAAGAATGTCCACTGTGCTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAACCCATCCAATAGCTTTGCTCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371-'41-44,'41-43,42-44
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.000 C2=0.338
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(30.1=93.6)
A:
NO
C2:
PF066029=Myotub-related=PD(9.4=54.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAACTCAGAGGCAGCAGT
R:
CCTGGCACTACCTGCTTAAGC
Band lengths:
113-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: