MmuEX0041065 @ mm10
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:110339890-110348995:-
Coord C1 exon
chr7:110348855-110348995
Coord A exon
chr7:110348361-110348397
Coord C2 exon
chr7:110339890-110340074
Length
37 bp
Sequences
Splice sites
3' ss Seq
GTACTAATATTCTGTTTCAGTTA
3' ss Score
8.73
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAGCAAGAAAAGTACTTGCAAGCCTTATTGACTGCAGTCATTGTCCATCAGAAACTCAGAGGCAGCAGTACTCTCACTGTCAGACCAGCACTTGCTCTGTCCCCAG
Seq A exon
TTATCATGTGATGGAACCCCAAAGGGTTCATGTAGAG
Seq C2 exon
GCGTATGGGCAAGTCTTCGTTCCAGCACCCGTTTGATCAGCTCCCCGACATCCTTCATTGATGTTGGTGCCAGGCTGGCAGGCAAGGACCACTCAGCCTCCTTCAGTAACAGTACCTACCTACAAAACCAACTCTTGAAACGACAAGCCGCCCTTTATATATTTGGTGAAAAGTCACAGCTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(24.3=85.4)
A:
NO
C2:
PF066029=Myotub-related=FE(13.3=100)
Main Inclusion Isoform:
ENSMUST00000033058fB3573
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGCAGTACTCTCACTGT
R:
GCCTGGCACCAACATCAATGA
Band lengths:
122-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types