RnoEX0078167 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174990226-174991340:-
Coord C1 exon
chr1:174991200-174991340
Coord A exon
chr1:174990703-174990739
Coord C2 exon
chr1:174990226-174990321
Length
37 bp
Sequences
Splice sites
3' ss Seq
GTACTAATATTCTGTTTCAGTTA
3' ss Score
8.73
5' ss Seq
GAGGTAACC
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAGCAAGAAAAGTACTTGCAAGCCCTATTGACTGCAGTTATTGTCCATCAGAAACTCAGAGGCAACAGTACTCTTACTGTCAGGCCAACACTTGCTCTGTCCCCAG
Seq A exon
TTATCATGTGATGGAACCCCAAAGGGTTCATGTAGAG
Seq C2 exon
GGACTGAAAGGAGGTCTTCAAGAATGTCCACTGTGCTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAACCCATCCAATAGCTTTGCTCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812-'52-60,'52-59,53-60
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.000 C2=0.394
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(23.8=83.3)
A:
NO
C2:
PF066029=Myotub-related=FE(6.5=100)
Main Inclusion Isoform:
ENSRNOT00000013126fB12908
Main Skipping Isoform:
ENSRNOT00000013126fB12914
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACTTGCTCTGTCCCCAG
R:
CGAGCAAAGCTATTGGATGGGT
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]