RnoEX0078181 @ rn6
Exon Skipping
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174981125-174991340:-
Coord C1 exon
chr1:174991200-174991340
Coord A exon
chr1:174982387-174982461
Coord C2 exon
chr1:174981125-174981309
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTCTTTAACTTACCTACCAGTGC
3' ss Score
6.32
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
TTTCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAGCAAGAAAAGTACTTGCAAGCCCTATTGACTGCAGTTATTGTCCATCAGAAACTCAGAGGCAACAGTACTCTTACTGTCAGGCCAACACTTGCTCTGTCCCCAG
Seq A exon
TGCATGGGTACAGAGACAAATGTTTCACTCAGTCAAATTCCAAATCTTCAGCTAAGGAACCAGTTCATAATCAAG
Seq C2 exon
GCGTCTGGGCAAGTCTTCGTTCCAGCACCCGTTTGATCAGCTCCCCAACATCCCTCATTGATGTTGGTGCCAGGCTGGCAGGCAAGGACCATTCAGCCTCCTTCAGTAACAGCACCTACCTACAAAACCAGCTCTCGAAACGACAAGCCGCCCTTTATATATTTGGTGAAAAGTCGCAGCTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812_MULTIEX3-3/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(23.8=83.3)
A:
PF066029=Myotub-related=FE(11.5=100)
C2:
PF066029=Myotub-related=FE(13.3=100)
Main Skipping Isoform:
ENSRNOT00000013126fB12908
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACTTGCTCTGTCCCCAG
R:
ATAAAGGGCGGCTTGTCGTTT
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]