RnoINT0130932 @ rn6
Intron Retention
Gene
ENSRNOG00000009812 | Sbf2
Description
SET binding factor 2 [Source:RGD Symbol;Acc:1588657]
Coordinates
chr1:174981125-174982461:-
Coord C1 exon
chr1:174982387-174982461
Coord A exon
chr1:174981310-174982386
Coord C2 exon
chr1:174981125-174981309
Length
1077 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
TTTTCTTGGCTTTTGTGAAGGCG
3' ss Score
3.95
Exon sequences
Seq C1 exon
TGCATGGGTACAGAGACAAATGTTTCACTCAGTCAAATTCCAAATCTTCAGCTAAGGAACCAGTTCATAATCAAG
Seq A exon
GTACCGTATCATGTGTCCCAGTGTGTCACTTTTTTAAAATCACCTTCTCATAAAAGTGAATGCTACAAGTAAATCTTCATGCTTGTCAAATTATCTCCTTTATTCTCATTTGTGTTATGAAGTTCCTGTGATTGCATTTAAACCCATTGCCATAATGCCTCAGATGTCATAACTTTGTATTAAGCAGAAATCACCTACCCTCTTCTTGCAAACTGGTCTATTAAGCTCCACAAATGCTGATAGAGGAGGTAACACCGCATAATTGAGGCAACTTAATCATTTAGAAATAAACCTGATTTATCACTGGGGAAGATTCTGAATCAGCCTTTCCAGGTCTACACAAGGAAACCCAACTTTGGGAAGGTTTTTACCCCTTTCCCCATCTCTGCAGCCATATGTGAAAGGCTCTGTTGCTTTAAAGATGCTGCATTTGGAATAAGTATATGCCTGTTTGAATGCTGGATATTTTAATCATCTCACATATACAAGTCCTTGATTTTTCTAATTAGTATAAATTAGGTCAGCTTATATGACATGACTCTTTGGTCTTCTTACTGTGGGTTGATTCTCTCTTGAAACATGTCTACTGACCATATATTTTAACTCCTAAATTAAGTGAAATGTGTATTACTAAATTTTTTTAGTTTTTATGGAGACTCTATAAAAGAATCTTTAGTTGTTTAAAATTAGGCCATTTTTTTTTTTTTACCTAACCAGATTTGCATTCTATACCCAGCCTCTGGCTTGAGAGGATTTCTTACATTTCTAGTTTACTTCGTGATATGGTTTCTTGCTTTTCTCTCAGATTTGCTTTAAATGCCACATTTACAATGACATGAAATGAGGCATGAATGATTTCTTAAGGTTCTTCTAAATCGAAGACAGTGATTTTTAAACTACTATATCAAATAGTATTTATATTGTTAAAAAAAAATGCCTAATGAGCGTTGTGATGCATGGCTTAGATTGATTGCCCCTTACAATTGGATTAAAGCTGTCCCCACAGCGACGAGTGTGTCTCTCTCAGCAGCATCCCACAGTGTCCATCTCATTCTGTTTTTCTTGGCTTTTGTGAAG
Seq C2 exon
GCGTCTGGGCAAGTCTTCGTTCCAGCACCCGTTTGATCAGCTCCCCAACATCCCTCATTGATGTTGGTGCCAGGCTGGCAGGCAAGGACCATTCAGCCTCCTTCAGTAACAGCACCTACCTACAAAACCAGCTCTCGAAACGACAAGCCGCCCTTTATATATTTGGTGAAAAGTCGCAGCTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009812:ENSRNOT00000013126:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(11.5=100)
A:
NA
C2:
PF066029=Myotub-related=FE(13.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGGGTACAGAGACAAATGT
R:
CCTAAGCTGCGACTTTTCACCA
Band lengths:
260-1337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]