GgaEX0008038 @ galGal4
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8625686-8632079:+
Coord C1 exon
chr5:8625686-8625823
Coord A exon
chr5:8629509-8629580
Coord C2 exon
chr5:8631898-8632079
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTTACTGTTTATCTGCCAGTGG
3' ss Score
6.83
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCCTGCTTCTTTAGAATCTTCGAGCAGTATAGAACAGGAAAAATACCTTCAAGCCTTACTGAATGTGATATCCGTCCACTGCAAAATGAATGGCAGTAATACTCTCACTGTTAGACCAACAATTGCTCTATCACCAG
Seq A exon
TGGTTGGGTACAGAGATAAATGTTTCACTCATTCCAATTCCAAATCAGCAACTAAGGGAAGAGTCCATCAAG
Seq C2 exon
GTGTGTGGGCCAGTCTTCGTTCAAGCAACCGATTTATCAACGCTCAGACTCCATTCATTGATGTTGGTGCAAGACTTGCAGGGAAAGATAATACCACTTCCTACAGCAGCACTTTTTTGCAGAGTCAGCTTTTGAGACGTCAAGCAGCCCTGTATATATTTGGAGAAAAATCTCAGTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.0=100)
A:
PF066029=Myotub-related=FE(4.9=100)
C2:
PF066029=Myotub-related=FE(13.0=100)
Main Inclusion Isoform:
ENSGALT00000009170fB869
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCACTGCAAAATGAATGGC
R:
AGTGCTGCTGTAGGAAGTGGT
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]