GgaINT0058207 @ galGal4
Intron Retention
Gene
ENSGALG00000005716 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:HGNC:2135]
Coordinates
chr5:8625686-8626963:+
Coord C1 exon
chr5:8625686-8625823
Coord A exon
chr5:8625824-8626867
Coord C2 exon
chr5:8626868-8626963
Length
1044 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTTTTCTTGGCTGACTTTAGGCA
3' ss Score
7.1
Exon sequences
Seq C1 exon
CTCCTGCTTCTTTAGAATCTTCGAGCAGTATAGAACAGGAAAAATACCTTCAAGCCTTACTGAATGTGATATCCGTCCACTGCAAAATGAATGGCAGTAATACTCTCACTGTTAGACCAACAATTGCTCTATCACCAG
Seq A exon
GTAAAATTGTTCTGTGTGGTGTTTTATGTGGTGAAAAGAGAGAAGGGAGTCTTTCATGGCTTTGGTGTTAATTCAGTTTGTCCAATGTGAATTCTGTTGTTTCTTTTATTGCTACACTTTGCAGGTAGTTTATTCATTCTTCCTTTTAGTGAATATGTTCTCTGTTCCTAAAAGATGTTTTTAAACTTTCCCAAAGTACTTTTCCATGTTCTTAATCGGGCAGTAGGTGATTCACAGCTTCAGTCCTTCAGAATATCAAGATGTGAGAACTATCCACATCAGTGGGTTGGGTTGTTTTTTTTTTAACATTATCGAATGAAGCAATTCCATTATATATATCATAATAAAAGACAAAGATGCACTTTAATGTGTTATATAACAAACTAAACATCTTGAAAACCATAGAATAAGAGACTGCCACCCTGAAGAGACTGTGGAATGCTACTCTGTTTCGTATAACTAGAAAATATGAGATTGCAATGTGAACAAATGTACTACAGCAGCAATGGGAGGCATATGGGGATTTTCATGTGTTACATACTCATAATAGTATCTTAATGCCATTTCTGCATAGAACTTGCAATGAAAACTCTTTCAAAAGACATTACTCAGTTAAATATTTTATTTCAATTATTATGTGATGCAACTTGATAAAGTTTATTTGAAAGTATCCCCAGATACTTTGCCAGATTCTTAAAAAGAAAAGAATGCAACTTAAAATTGTGCCTGTCCTGCCTTATCCAGCTAGTGGAAATTTGCATAATATACCCAAACGGTGGCTTCTCTTGTTAAATAACACTGTTTCCAAAGTGTGGATGCTTTGCTTCGTTTATTATAAAAGATGTTGATTGCTTATTTGTATCTAACATCTTCATTCTGTTGCCAGTGTATACATCTGTCTTAAAAAAATGTATCAGAAGTACAAAATTGGCAAGAATTATCTGTATTAAGGGTGGAAAAATATTTTCATCATTTCTGTGAAGTGTTAGTCTGAGTAACACTGTAGTGTTTTTAATCTTGTATTCTTTTCTTGGCTGACTTTAG
Seq C2 exon
GCACTGACAGGAGGGCTTCAAGAATGTCTACTGTGTTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAATCTATCCAATAGCTTTGCTCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716:ENSGALT00000009170:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.0=100)
A:
NA
C2:
PF066029=Myotub-related=FE(6.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTTCTTTAGAATCTTCGAGC
R:
TCCTCGAGCAAAGCTATTGGA
Band lengths:
232-1276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]