BtaEX0031430 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000043981 | SBF2
Description
Bos taurus SET binding factor 2 (SBF2), mRNA. [Source:RefSeq mRNA;Acc:NM_001103237]
Coordinates
chr15:43429969-43440412:+
Coord C1 exon
chr15:43429969-43430109
Coord A exon
chr15:43438860-43438934
Coord C2 exon
chr15:43440228-43440412
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTTTAATCTTACCTACCAGTGC
3' ss Score
7.49
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAACAAGAAAAGTACTTGCAAGCATTACTGAGTGCAGTTTCTGTCCATCAGAAACTCAGTGGCAATAACCCTCTTACTGTCAGGCCAGCACTTGCTCTGTCTCCAG
Seq A exon
TGCATGGGTACAGAGATAAATGTTTTACTCAGTCCAATCCCAAATCTTCAGCTAAGGGAAGAGTCCATAATCAAG
Seq C2 exon
GTGTTTGGGCAAGTCTTCGCTCTAGCACTCGCCTGATCAGCTCTCCAACATCCTTCATTGATGTTGGCGCCCGGCTGGCAGGCAAGGATCACTCGACCTCCTTCAGTAACAGCACTTACCTGCAAAACCAGCTCTTGAAACGTCAAGCAACCCTTTACATATTTGGTGAGAAGTCACAGCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043981_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(22.4=77.1)
A:
PF066029=Myotub-related=FE(5.5=100)
C2:
PF066029=Myotub-related=FE(14.1=100)
Main Inclusion Isoform:
ENSBTAT00000061615fB6140
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACTGTCAGGCCAGCACT
R:
GCTGGTTTTGCAGGTAAGTGC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development