HsaEX0056306 @ hg19
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:2135]
Coordinates
chr11:9838387-9849768:-
Coord C1 exon
chr11:9849673-9849768
Coord A exon
chr11:9840776-9840850
Coord C2 exon
chr11:9838387-9838571
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTTTAATCTTACCTACCAGTGC
3' ss Score
7.49
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGACTGAAAGGAGGACTTCAAGAATGTCCACTGTGCTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAACCCATCCAATAGCTTTGCTCAAGGAG
Seq A exon
TGCATGGGTACAGAGATAAATGTTTTACTCAGTCAAATCCCAAATCTTCAGCTAAGGGAAGAGTCCATAATCAAG
Seq C2 exon
GTGTGTGGGCAAGTCTTCGCTCTAGCACTCGCTTGATCAGCTCTCCAACATCCTTCATTGATGTTGGCGCCCGGCTGGCAGGCAAGGATCACTCGGCCTCCTTCAGTAACAGCAGCTACCTACAAAACCAGCTCTTGAAACGGCAAGCAGCCCTTTACATATTTGGTGAAAAGTCGCAACTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812-'39-40,'39-39,40-40
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(9.4=100)
A:
PF066029=Myotub-related=FE(6.7=100)
C2:
PF066029=Myotub-related=FE(14.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGTGCCAGGACATTTGGA
R:
GCTGCTGTTACTGAAGGAGGC
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)