HsaEX0056320 @ hg19
Exon Skipping
Gene
ENSG00000133812 | SBF2
Description
SET binding factor 2 [Source:HGNC Symbol;Acc:2135]
Coordinates
chr11:9838387-9851043:-
Coord C1 exon
chr11:9850903-9851043
Coord A exon
chr11:9849673-9849768
Coord C2 exon
chr11:9838387-9838571
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTGGCTGACTTTAGGGA
3' ss Score
7.97
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
CTCCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAACAAGAGAAATACTTGCAAGCCTTACTGAATGCTGTTTCTGTCCATCAGAAACTCAGAGGCAACAGCACTCTTACTGTCAGGCCAGCCTTTGCTCTATCTCCAG
Seq A exon
GGACTGAAAGGAGGACTTCAAGAATGTCCACTGTGCTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAACCCATCCAATAGCTTTGCTCAAGGAG
Seq C2 exon
GTGTGTGGGCAAGTCTTCGCTCTAGCACTCGCTTGATCAGCTCTCCAACATCCTTCATTGATGTTGGCGCCCGGCTGGCAGGCAAGGATCACTCGGCCTCCTTCAGTAACAGCAGCTACCTACAAAACCAGCTCTTGAAACGGCAAGCAGCCCTTTACATATTTGGTGAAAAGTCGCAACTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133812_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.151 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.9=100)
A:
PF066029=Myotub-related=FE(9.4=100)
C2:
PF066029=Myotub-related=FE(14.1=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACTGTCAGGCCAGCCTT
R:
TGCCGTTTCAAGAGCTGGTTT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)