GgaEX0008037 @ galGal3
Exon Skipping
Gene
ENSGALG00000005716 | SBF2
Description
NA
Coordinates
chr5:10146550-10152943:+
Coord C1 exon
chr5:10146550-10146687
Coord A exon
chr5:10147732-10147827
Coord C2 exon
chr5:10152762-10152943
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTGGCTGACTTTAGGCA
3' ss Score
7.1
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
CTCCTGCTTCTTTAGAATCTTCGAGCAGTATAGAACAGGAAAAATACCTTCAAGCCTTACTGAATGTGATATCCGTCCACTGCAAAATGAATGGCAGTAATACTCTCACTGTTAGACCAACAATTGCTCTATCACCAG
Seq A exon
GCACTGACAGGAGGGCTTCAAGAATGTCTACTGTGTTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAATCTATCCAATAGCTTTGCTCGAGGAG
Seq C2 exon
GTGTGTGGGCCAGTCTTCGTTCAAGCAACCGATTTATCAACGCTCAGACTCCATTCATTGATGTTGGTGCAAGACTTGCAGGGAAAGATAATACCACTTCCTACAGCAGCACTTTTTTGCAGAGTCAGCTTTTGAGACGTCAAGCAGCCCTGTATATATTTGGAGAAAAATCTCAGTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005716_MULTIEX1-1/3=C1-3
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.7=100)
A:
PF066029=Myotub-related=FE(6.9=100)
C2:
PF066029=Myotub-related=FE(14.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCACTGCAAAATGAATGGC
R:
AGTGCTGCTGTAGGAAGTGGT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]