DreEX0064274 @ danRer10
Exon Skipping
Gene
ENSDARG00000059460 | sbf2
Description
SET binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-030911-10]
Coordinates
chr7:66899986-66913343:+
Coord C1 exon
chr7:66899986-66900123
Coord A exon
chr7:66905528-66905611
Coord C2 exon
chr7:66913165-66913343
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTGTGTCTTCATCTGTTTAGCAA
3' ss Score
6.62
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTCCAACTTCCTCCGATACCTCCAGCAGTCTGGAACAGGAGAAGTATCTGCAAGCCATCCTCAGCTCTATCCCCATCTACTTTAAACCCAACGGCAGCAACACGCTCACCAACCGCTCTCTCATCGGCTTGTCCCCAG
Seq A exon
CAAGCGAACGCAGGGCATCGAGAATACCAAAGATGGCCCCTGTCCATTTGGACATTTCCTTCACCAATAGCTTCACCAGAGGAG
Seq C2 exon
GTGTGTGGGCTAGTCTGCGCTCCAGCAGCAGATTCATCCAGCATCCCGCTGTAGGCGACGTGGGCGCGCGGTTAGCTGGCAAGGATCTGGCGCCCCCTACAGGCATTGAGAACCTGCAGGCTCAACTCCTTAAGCATCAAGCCGCTCTTTACATCTTTGGCGAAAAGTCTCACTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059460_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.069 C2=0.033
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(9.5=100)
A:
PF066029=Myotub-related=FE(5.8=100)
C2:
PF066029=Myotub-related=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGATACCTCCAGCAGTCTG
R:
TGCTGGATGAATCTGCTGCTG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]