MmuEX0041073 @ mm9
Exon Skipping
Gene
ENSMUSG00000038371 | Sbf2
Description
SET binding factor 2 [Source:MGI Symbol;Acc:MGI:1921831]
Coordinates
chr7:117483404-117492509:-
Coord C1 exon
chr7:117492369-117492509
Coord A exon
chr7:117491401-117491496
Coord C2 exon
chr7:117483404-117483588
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGCTAACTTTAGGGA
3' ss Score
9.26
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
TTTCTACCTCCTCTTTAGAATCTTCCAGTAGCATAGAGCAAGAAAAGTACTTGCAAGCCTTATTGACTGCAGTCATTGTCCATCAGAAACTCAGAGGCAGCAGTACTCTCACTGTCAGACCAGCACTTGCTCTGTCCCCAG
Seq A exon
GGACTGAAAGGAGGTCTTCAAGAATGTCCACTGTGCTTAAGCAGGTAGTGCCAGGACATTTGGATGTAAACCCATCCAATAGCTTTGCTCGAGGAG
Seq C2 exon
GCGTATGGGCAAGTCTTCGTTCCAGCACCCGTTTGATCAGCTCCCCGACATCCTTCATTGATGTTGGTGCCAGGCTGGCAGGCAAGGACCACTCAGCCTCCTTCAGTAACAGTACCTACCTACAAAACCAACTCTTGAAACGACAAGCCGCCCTTTATATATTTGGTGAAAAGTCACAGCTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038371_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.107 A=0.338 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=PD(30.1=93.6)
A:
PF066029=Myotub-related=PD(9.4=54.5)
C2:
PF066029=Myotub-related=FE(13.3=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTCAGACCAGCACTTGC
R:
GCGGCTTGTCGTTTCAAGAGT
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types