BtaEX0031466 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005844 | SCAMP2
Description
Bos taurus secretory carrier membrane protein 2 (SCAMP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102170]
Coordinates
chr21:34221828-34224016:+
Coord C1 exon
chr21:34221828-34221956
Coord A exon
chr21:34222604-34222763
Coord C2 exon
chr21:34223915-34224016
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCCACCTCCCCTTCCCCAGTGC
3' ss Score
8.29
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGAGAGAGAACAACTGGCCGCCCCTGCCCGTGTGGTGCCCTGTCAAGCCCTGCTTCTATCAGGACTTCTCCACAGAGATCCCTGCCGACTACCAGCGGATATGCAAGATGCTCTACTATCTCTGGATGT
Seq A exon
TGCATTCAGTGACTCTGTTTCTGAACCTGCTTGCCTGCCTGGCCTGGTTCTTAGTCGACACCTCCAGGGGAGTAGACTTCGGCCTCTCCATCCTGTGGTTTGTGATCTTCACCCCCTGTGCCTTCCTTTGTTGGTATCGACCCATCTATAAGGCTTTCAG
Seq C2 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTCTTTGTATTTTTCTGTCAAATAGGGATCTACATCATCCAGTTGATCGGCATCCCTAGCCTTGGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005844_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(29.8=100)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGAACAACTGGCCGC
R:
CTGTCCCCAAGGCTAGGG
Band lengths:
230-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development