DreEX0064331 @ danRer10
Exon Skipping
Gene
ENSDARG00000010279 | scamp2
Description
secretory carrier membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2702]
Coordinates
chr25:2896049-2899160:-
Coord C1 exon
chr25:2899032-2899160
Coord A exon
chr25:2897354-2897513
Coord C2 exon
chr25:2896049-2896150
Length
160 bp
Sequences
Splice sites
3' ss Seq
ATGTTTGTGTGTGTGCGCAGGGG
3' ss Score
9.73
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCAAACAGAACAACTGGCCTCCCCTGCCCAAGAGATTTCCCATCCAGCCTTGCTTCTACCAGGACTTCTCAGAGGAGATCCCTCAGGAGCACCAGCGTCTCTGCAAGATGATCTACTACCTGTGGATGT
Seq A exon
GGGAGTGTGTGACGCTGTTTCTGAATGTTCTGGCGTGTCTGGCTGATTTCACCACTAACTCAGAGGCAGGCGTTGACTTCGGCCTCTCCATCCTCTGGTTCATCCTCTTCGCTCCCTGCTCCTTCATCTGCTGGTTCAGGCCCGTCTATAAGGCCTTCAG
Seq C2 exon
GTCTGACAGCTCCTTCAATTTCTTCTTCTTCTTCTTCGTTTTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010279-'5-7,'5-6,7-7
Average complexity
S
Mappability confidence:
78%=60=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(29.8=100)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACAACTGGCCTCCCCT
R:
GAATCCCCACAGCCTGGATGA
Band lengths:
210-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]