MmuEX6066209 @ mm10
Exon Skipping
Gene
ENSMUSG00000040188 | Scamp2
Description
secretory carrier membrane protein 2 [Source:MGI Symbol;Acc:MGI:1346518]
Coordinates
chr9:57580784-57582953:+
Coord C1 exon
chr9:57580784-57580912
Coord A exon
chr9:57581490-57581649
Coord C2 exon
chr9:57582852-57582953
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTTGCTCCTTCCTAGTGC
3' ss Score
8.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGCGAGACAACAACTGGCCGCCACTCCCCTCATGGTGCCCTGTGAAACCCTGCTTCTATCAGGACTTCTCCACGGAGATCCCTGCTGACTACCAGCGGATTTGCAAGATGCTTTACTATCTCTGGATGT
Seq A exon
TGCATTCAGTGACTCTGTTTCTAAACCTGCTTGCGTGCCTGGCCTGGTTCACAAGTGACGCAGCCAATGGAACAGCCTTTGGCCTCTCCATCCTTTGGTTTCTGATCTTCACTCCCTGTGCCTTCCTTTGTTGGTACCGACCCATCTACAAGGCTTTCAG
Seq C2 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGGATCTACTTCATCCAGTTGATTGGCTTGCCTAACTTGGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040188_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.5=95.5)
A:
PF041448=SCAMP=FE(29.6=100)
C2:
PF041448=SCAMP=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGACAACAACTGGCC
R:
CCCCAAGTTAGGCAAGCCAAT
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types