RnoEX0078295 @ rn6
Exon Skipping
Gene
ENSRNOG00000019136 | Scamp2
Description
secretory carrier membrane protein 2 [Source:RGD Symbol;Acc:68348]
Coordinates
chr8:62359972-62362137:+
Coord C1 exon
chr8:62359972-62360100
Coord A exon
chr8:62360678-62360837
Coord C2 exon
chr8:62362036-62362137
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTGCCCCTTCCTAGTGC
3' ss Score
8.7
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TAAGAGAAAACAACTGGCCGCCACTCCCCTCATGGTGCCCTGTGAAACCCTGCTTCTATCAGGACTTCTCCACGGAGATCCCTGCCGACTACCAGCGGATATGCAAGATGCTTTACTATCTGTGGATGT
Seq A exon
TGCATTCAGTGACTCTGTTTCTAAACCTGCTTGCATGCCTGGCCTGGTTCACAAGTGACGCAGCTAATGGAACAGCCTTTGGCCTCTCCATCCTTTGGTTTCTGATTTTCACGCCCTGTGCCTTCCTTTGTTGGTACCGACCCATCTACAAGGCTTTCAG
Seq C2 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGAATCTACTTCATCCAGTTGATTGGCTTGCCTAACTTGGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019136-'13-15,'13-11,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120723=DUF3552=PD(10.9=11.4),PF041448=SCAMP=PU(42.4=95.5)
A:
PF041448=SCAMP=FE(29.6=100)
C2:
PF041448=SCAMP=FE(19.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAAACAACTGGCCGCC
R:
CTGGTCCCCAAGTTAGGCAAG
Band lengths:
230-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]